Bio
Originally from Massachusetts, USA, Jonathan came to Montréal to study Physics at McGill University in 2017. He began working with the Enger Lab in January 2020, and graduated with a B.Sc. in Physics in August 2020. After a year of full-time research with the lab, Jonathan returned to McGill for his M.Sc. in Medical Physics. His research is focused on the development of Monte Carlo simulation software to facilitate dosimetry calculations for various radiotherapy modalities. When not in class or at the lab, Jonathan enjoys hiking, bike riding, cooking vegan food, and learning the drums.
Current Projects
Monte Carlo-based Dosimetry for GRID Radiotherapy

RapidBrachyTG43: A Geant4-based TG-43 Parameter Calculation Engine for Brachytherapy Applications

2023
Rahbaran, Maryam; Kalinowski, Jonathan; Tsui, James Man Git; DeCunha, Joseph; Croce, Kevin; Bergmark, Brian; Devlin, Philip; Enger, Shirin A.
Development Of a Novel Dosimetry Software for Patient-specific Intravascular Brachytherapy Treatment Planning on Optical Coherence Tomography Images Presentation
22.06.2023, (2023 American Brachytherapy Society (ABS) Annual Meeting, Vancouver, Canada).
@misc{nokey,
title = {Development Of a Novel Dosimetry Software for Patient-specific Intravascular Brachytherapy Treatment Planning on Optical Coherence Tomography Images},
author = {Maryam Rahbaran and Jonathan Kalinowski and James Man Git Tsui and Joseph DeCunha and Kevin Croce and Brian Bergmark and Philip Devlin and Shirin A. Enger},
year = {2023},
date = {2023-06-22},
note = {2023 American Brachytherapy Society (ABS) Annual Meeting, Vancouver, Canada},
keywords = {},
pubstate = {published},
tppubtype = {presentation}
}
2022
Kalinowski, Jonathan
McGill Faculty of Medicine and Health Sciences Internal Studentship award
2022.
@award{nokey,
title = {McGill Faculty of Medicine and Health Sciences Internal Studentship},
author = {Jonathan Kalinowski},
url = {https://www.mcgill.ca/medhealthsci-gradstudies/funding-opportunities/graduate-students/internal-studentships},
year = {2022},
date = {2022-08-15},
urldate = {2022-08-15},
organization = {McGill University Faculty of Medicine and Health Sciences},
abstract = {Internal Studentships are open to highly qualified Faculty of Medicine graduate students who are registered full-time in a research training program (Thesis) leading to an M.Sc or PhD degree.
},
keywords = {},
pubstate = {published},
tppubtype = {award}
}
Rahbaran, Maryam; Kalinowski, Jonathan; Tsui, James Man Git; DeCunha, Joseph; Enger, Shirin A.
Monte-Carlo Based Simulations of the Uncertainties in Clinical Water-Based Intravascular Brachytherapy Dosimetry Presentation
11.04.2022.
@misc{nokey,
title = {Monte-Carlo Based Simulations of the Uncertainties in Clinical Water-Based Intravascular Brachytherapy Dosimetry},
author = {Maryam Rahbaran and Jonathan Kalinowski and James Man Git Tsui and Joseph DeCunha and Shirin A. Enger},
year = {2022},
date = {2022-04-11},
urldate = {2022-04-11},
journal = {MCMA},
abstract = {"Introduction
Coronary artery disease (CAD) is the most common form of cardiovascular disease and is caused by excess plaque along the arterial wall, blocking blood flow to the heart (stenosis). Percutaneous transluminal coronary angioplasty widens a narrowed artery, leaving behind metal stents (1). However, in-stent restenosis (ISR) may occur due to damage to the arterial wall tissue, triggering neointimal hyperplasia which produces fibrotic and calcified plaques, narrowing the artery again. Drug-eluting stents (DES) slowly release medication to inhibit neointimal hyperplasia to prevent ISR but they fail in 3% to 20% of cases (2). Intravascular brachytherapy (IVBT), which uses b-emitting radionuclides to prevent ISR, is used in these failed cases. However, current dosimetry for IVBT is water based and does not consider attenuation of the radiation by heterogeneities such as the IVBT device guidewire, non-uniform distribution of calcified plaques, and stent material, or the angular dependence of dose distribution (3, 4, 5). The aim of this study was to investigate the uncertainties in clinical water based IVBT dosimetry, considering the effect of heterogeneities on dose distribution.
Materials & Methods
An inhouse Monte-Carlo based dosimetry package for IVBT applications based on Geant4 10.04 (patch 2) was developed. Patient’s artery was modelled as a 32 mm long, 8.4 mm diameter cylinder comprised of three layers: tunica media, represented with muscle, tunica intima, represented with fibrotic plaque, and tunica adventitia, represented with collagen. These layers had mass densities 1.06 g/cm3, 1.22 g/cm3 and 1.07 g/cm3 respectively. The innermost layer consisted of calcified plaque of density 1.45 g/cm3 with varying thicknesses between 0.9 and 1.9 mm with an eccentric shape and a rough surface. The stents had similar composition to Boston Scientific Synergy stents and were modelled to not overlap. The Novoste Beta-Cath 3.5F IVBT device model was used, which has a 90Sr90Y source. The geometry is shown in Figure 1a. A cylindrical scoring geometry was implemented. Two set of simulations were performed. In the first simulation called water phantom, the entire system consisted of water with unit density, and dose to water was calculated similar to the clinical water based dosimetry. In the second simulation called the artery model proper material and mass densities were assigned to each component. To ensure uncertainties below 0.8% within a 1 mm radial distance to the source and 2% within 4.2 mm from the source, 100 million decay events were simulated. The Penelope physics list was used to simulate the electromagnetic interactions between particles. Average, minimum, and maximum dose was calculated at 2.0 mm from the source center and directly and 1 mm behind the outermost stents and guidewire. Absorbed dose was normalized to 23 Gy at 2.0 mm from the source center.
Results
International Conference on Monte Carlo Techniques for Medical Applications, 2022
Compared to the water phantom (Figure 1b), average dose in the artery model (Figure 1c) was attenuated by 50.9% at 2 mm from the source centre and directly behind the guidewire and outermost stent by 66.2%, and by 69.5% 1 mm behind this region. There was significant variation in dose around the source due to the guidewire attenuating dose the most, and heterogeneous distribution of calcification.
Discussion & Conclusions
Dosimetry for IVBT based on dose rate in water is not accurate. Heterogeneities need to be considered to deliver adequate dose to the lesion area. Stent material, heterogenous distribution of calcification and the off cantered placement of the guidewire affects the uniformity of dose distribution around the source. Patients may benefit from personalized treatment planning taking dose-attenuating by different tissue/material heterogeneities into account.
References
[1] Virani, Salim, S., et al. ""Heart Disease and Stroke Statistics—2020 Update"". Circulation, vol. 141, no. 9, March 03, 2020, pp. e336. doi: 10.1161/CIR.0000000000000757.
[2] Lee M, Banka G. In-stent restenosis. Interv Cardiol Clin 2016;5: 211e220.
[3] Chiu-Tsao ST, Schaart DR, Soares CG, et al. Dose calculation formalisms and consensus dosimetry parameters for intravascular brachytherapy dosimetry: Recommendations of the AAPM Therapy Physics Committee Task Group No. 149. Med Phys 2007;34: 4126e4157.
[4] Rivard MJ, Coursey BM, DeWerd LA, et al. Update of AAPM Task Group No. 43 Report: A revised AAPM protocol for brachytherapy dose calculations. Med Phys 2004;31:633e674.
[5] Nath R, Amols H, Coffey C, et al. Intravascular brachytherapy physics: Report of the AAPM Radiation Therapy Committee Task group No. 60. Med Phys 1999;26:119e152.’
[6] Agostinelli S, Allison J, Amako K, et al. Geant4da simulation toolkit. Nucl Instrum Methods Phys Res 2003;506:230e303."},
keywords = {},
pubstate = {published},
tppubtype = {presentation}
}
Coronary artery disease (CAD) is the most common form of cardiovascular disease and is caused by excess plaque along the arterial wall, blocking blood flow to the heart (stenosis). Percutaneous transluminal coronary angioplasty widens a narrowed artery, leaving behind metal stents (1). However, in-stent restenosis (ISR) may occur due to damage to the arterial wall tissue, triggering neointimal hyperplasia which produces fibrotic and calcified plaques, narrowing the artery again. Drug-eluting stents (DES) slowly release medication to inhibit neointimal hyperplasia to prevent ISR but they fail in 3% to 20% of cases (2). Intravascular brachytherapy (IVBT), which uses b-emitting radionuclides to prevent ISR, is used in these failed cases. However, current dosimetry for IVBT is water based and does not consider attenuation of the radiation by heterogeneities such as the IVBT device guidewire, non-uniform distribution of calcified plaques, and stent material, or the angular dependence of dose distribution (3, 4, 5). The aim of this study was to investigate the uncertainties in clinical water based IVBT dosimetry, considering the effect of heterogeneities on dose distribution.
Materials & Methods
An inhouse Monte-Carlo based dosimetry package for IVBT applications based on Geant4 10.04 (patch 2) was developed. Patient’s artery was modelled as a 32 mm long, 8.4 mm diameter cylinder comprised of three layers: tunica media, represented with muscle, tunica intima, represented with fibrotic plaque, and tunica adventitia, represented with collagen. These layers had mass densities 1.06 g/cm3, 1.22 g/cm3 and 1.07 g/cm3 respectively. The innermost layer consisted of calcified plaque of density 1.45 g/cm3 with varying thicknesses between 0.9 and 1.9 mm with an eccentric shape and a rough surface. The stents had similar composition to Boston Scientific Synergy stents and were modelled to not overlap. The Novoste Beta-Cath 3.5F IVBT device model was used, which has a 90Sr90Y source. The geometry is shown in Figure 1a. A cylindrical scoring geometry was implemented. Two set of simulations were performed. In the first simulation called water phantom, the entire system consisted of water with unit density, and dose to water was calculated similar to the clinical water based dosimetry. In the second simulation called the artery model proper material and mass densities were assigned to each component. To ensure uncertainties below 0.8% within a 1 mm radial distance to the source and 2% within 4.2 mm from the source, 100 million decay events were simulated. The Penelope physics list was used to simulate the electromagnetic interactions between particles. Average, minimum, and maximum dose was calculated at 2.0 mm from the source center and directly and 1 mm behind the outermost stents and guidewire. Absorbed dose was normalized to 23 Gy at 2.0 mm from the source center.
Results
International Conference on Monte Carlo Techniques for Medical Applications, 2022
Compared to the water phantom (Figure 1b), average dose in the artery model (Figure 1c) was attenuated by 50.9% at 2 mm from the source centre and directly behind the guidewire and outermost stent by 66.2%, and by 69.5% 1 mm behind this region. There was significant variation in dose around the source due to the guidewire attenuating dose the most, and heterogeneous distribution of calcification.
Discussion & Conclusions
Dosimetry for IVBT based on dose rate in water is not accurate. Heterogeneities need to be considered to deliver adequate dose to the lesion area. Stent material, heterogenous distribution of calcification and the off cantered placement of the guidewire affects the uniformity of dose distribution around the source. Patients may benefit from personalized treatment planning taking dose-attenuating by different tissue/material heterogeneities into account.
References
[1] Virani, Salim, S., et al. ""Heart Disease and Stroke Statistics—2020 Update"". Circulation, vol. 141, no. 9, March 03, 2020, pp. e336. doi: 10.1161/CIR.0000000000000757.
[2] Lee M, Banka G. In-stent restenosis. Interv Cardiol Clin 2016;5: 211e220.
[3] Chiu-Tsao ST, Schaart DR, Soares CG, et al. Dose calculation formalisms and consensus dosimetry parameters for intravascular brachytherapy dosimetry: Recommendations of the AAPM Therapy Physics Committee Task Group No. 149. Med Phys 2007;34: 4126e4157.
[4] Rivard MJ, Coursey BM, DeWerd LA, et al. Update of AAPM Task Group No. 43 Report: A revised AAPM protocol for brachytherapy dose calculations. Med Phys 2004;31:633e674.
[5] Nath R, Amols H, Coffey C, et al. Intravascular brachytherapy physics: Report of the AAPM Radiation Therapy Committee Task group No. 60. Med Phys 1999;26:119e152.’
[6] Agostinelli S, Allison J, Amako K, et al. Geant4da simulation toolkit. Nucl Instrum Methods Phys Res 2003;506:230e303."
2021
Kalinowski, Jonathan
Merit-based recruitment award for first year MSc students. award
2021.
@award{nokey,
title = {Merit-based recruitment award for first year MSc students.},
author = {Jonathan Kalinowski},
year = {2021},
date = {2021-09-01},
urldate = {2021-09-01},
organization = {McGill Medical Physics Unit},
keywords = {},
pubstate = {published},
tppubtype = {award}
}
Morcos, Marc; Antaki, Majd; Thibodeau-Antonacci, Alana; Kalinowski, Jonathan; Glickman, Harry; Enger, Shirin A.
RapidBrachyMCTPS: An open-source dose calculation and optimization tool for brachytherapy research Presentation
COMP, 01.06.2021.
@misc{Morcos2021c,
title = {RapidBrachyMCTPS: An open-source dose calculation and optimization tool for brachytherapy research},
author = {Marc Morcos and Majd Antaki and Alana Thibodeau-Antonacci and Jonathan Kalinowski and Harry Glickman and Shirin A. Enger},
year = {2021},
date = {2021-06-01},
howpublished = {COMP},
keywords = {},
pubstate = {published},
tppubtype = {presentation}
}